HsaEX0034930 @ hg19
Exon Skipping
Gene
ENSG00000188883 | KLRG2
Description
killer cell lectin-like receptor subfamily G, member 2 [Source:HGNC Symbol;Acc:24778]
Coordinates
chr7:139137436-139164518:-
Coord C1 exon
chr7:139164373-139164518
Coord A exon
chr7:139138857-139138960
Coord C2 exon
chr7:139137436-139138453
Length
104 bp
Sequences
Splice sites
3' ss Seq
AGCTTACTTTTCTCCCTCAGGAC
3' ss Score
9.6
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GAGCCAGATGCCAGCAGTGCCCCCCAGGCTGGGTGTTGTCCGAGGAGCACTGTTACTACTTCTCTGCAGAAGCGCAGGCCTGGGAAGCCAGCCAGGCTTTCTGCTCAGCCTACCACGCTACCCTCCCCCTGCTAAGCCACACCCAG
Seq A exon
GACTTCCTGGGCAGATACCCAGTCTCCAGGCACTCCTGGGTGGGGGCCTGGCGAGGCCCCCAGGGCTGGCACTGGATCGACGAGGCCCCACTCCCGCCCCAGCT
Seq C2 exon
ACTCCCTGAGGACGGCGAGGACAATCTGGATATCAACTGTGGGGCCCTGGAGGAAGGCACGCTGGTGGCTGCAAACTGCAGCACTCCAAGACCCTGGGTCTGTGCCAAGGGGACCCAGTGATCTGGGCTCTGCCTGGTCCTCAGCCTGCCAGGCAGATGCAGCACCCCCTACAGGGGAGGCCAGTTGAGAGCTTGGGCAGCCTCTTCCTGGACCCAGTTATCCAGGTCTTCATGCTCTGCTCAAGGGGGCCACATGAGCGAGCCTAGGAGCTGGACTTCAACCCAGGAAGATGCATCCGAGGGAAAGGAGATTTTCTATGGCCTCAGGCCTGAGTGCCAATATTAGTCTCCAGCTTCTGTGGATGATCGGTTTGATGACATTGGGATGGTTGTTTAGCATTTCTGTGCCTTGGTTTCATTAAAATGACAATTTCCCCCTAGAGGAAAAAGACAGGGTTAACAACCACAGCGGATTCCAATCTGGGTTCTCATTCCGGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188883_MULTIEX1-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.214
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(25.8=51.0)
A:
PF0005916=Lectin_C=FE(35.1=100)
C2:
PF0005916=Lectin_C=PD(37.1=87.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCTGCTCAGCCTACCACG
R:
CTGCCCAAGCTCTCAACTGG
Band lengths:
250-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)