MmuEX6003833 @ mm10
Exon Skipping
Gene
ENSMUSG00000071537 | Klrg2
Description
killer cell lectin-like receptor subfamily G, member 2 [Source:MGI Symbol;Acc:MGI:1921503]
Coordinates
chr6:38625693-38629909:-
Coord C1 exon
chr6:38629764-38629909
Coord A exon
chr6:38628085-38628188
Coord C2 exon
chr6:38625693-38627725
Length
104 bp
Sequences
Splice sites
3' ss Seq
CTGCCTGCTTTTCCCCTCAGGAC
3' ss Score
11.92
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GAACCAAGTGCCAACCATGCCCTCAAGGCTGGATGTGGTCTCAGGAACAATGCTACTACCTCTCTGAAGAAGCCCAAGACTGGGAGGGCAGCCAGGCATTCTGCTCAGCCCATCATGCCACACTGCCTCTGCTGAGCCACACCCAG
Seq A exon
GACTTCTTAAGAAAATACCGGATCACCAAGGGCTCCTGGGTGGGGGCCCGACGAGGCCCTGAAGGCTGGCACTGGACTGATGGGGTCCCTTTGCCATCCCAACT
Seq C2 exon
ATTCCCAGCAGACAGTGAGGACCACCCAGACTTCAGCTGTGGGGGTTTGGAAGAAGGCAGGCTCGTGGCTCTTGACTGCAGTTCTCCTAGACCCTGGGTCTGTGCCAGAGAAACCAAATGACTTAGTCTCCTGTGTTGGACCTGTCTGGAGTTGTCCCCATGGCTTTTGCTTTGGTGTGACCAAAGTATCTGACAGAAACAACTTCAAAGAGGCAAGAATGAGCAGGCTCACGGTTTCAGAGGGCTGCACCTGGCAGAGCTGCCCAGTCCACCGCAGCAGAGGAAATGCTGGAGCCAGGGGATGGGAACAACCATCAAAGGGCTGTCACTGTTGACATACATCCACACCAGGCTCTACCTCCTCAAACTCCCAAGTCACCCCTAAACCCAGCACTACCAGCTGGGAACAAACCTGCGGCGGACATTTCAGACTCAACCCAGAGCATTCCTATTACAAATCCCCTCAAGATTCATGACTGTCTTGTCTTGTTTTGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071537-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(25.8=51.0)
A:
PF0005916=Lectin_C=FE(35.1=100)
C2:
PF0005916=Lectin_C=PD(37.1=87.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTCTGAAGAAGCCCAAGA
R:
GGACAACTCCAGACAGGTCCA
Band lengths:
246-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types