RnoEX0047535 @ rn6
Exon Skipping
Gene
ENSRNOG00000006814 | Klrg2
Description
killer cell lectin like receptor G2 [Source:RGD Symbol;Acc:1587495]
Coordinates
chr4:66371511-66375600:-
Coord C1 exon
chr4:66375455-66375600
Coord A exon
chr4:66371973-66372076
Coord C2 exon
chr4:66371511-66371631
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTCCCACTTTTCTCCCCTAGGAC
3' ss Score
12.91
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GAGCCAAATGCCAACCGTGCCCTCAAGGCTGGATGTGGTCTCAGGAACACTGTTACTACCTCTCTGAAGAAGTCCAAGACTGGGAGAGCAGCCAAGCATTTTGCTCAGCCCACCAGGCCACACTGCCTCTGCTGAACCACACCCAG
Seq A exon
GACTTCTTAAGAAAATACCAGGTCACCAAGGGCTCCTGGGTGGGGGCCCGACGAGGCCCTGAAGGCTGGCACTGGACTGATGGGGTTCCCTTGCCATCCCAACT
Seq C2 exon
GTTCCTGGAAGACAGTGAGGACCACCCAGACTTCAGCTGTGGGGGTTTGGAAGAAGGCAGGCTCGTGGCTCTTGACTGCAGCTCTCCCAGACCCTGGGTCTGTGCCAAAGGAACCAAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006814-'3-5,'3-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(25.8=51.0)
A:
PF0005916=Lectin_C=FE(35.1=100)
C2:
PF0005916=Lectin_C=PD(37.1=87.8)
Main Skipping Isoform:
ENSRNOT00000009194fB7452
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGGCTGGATGTGGTCTC
R:
TTGGTTCCTTTGGCACAGACC
Band lengths:
242-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]