BtaEX6029993 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002392 | ANK2
Description
ankyrin 2, neuronal [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr6:13405776-13417706:-
Coord C1 exon
chr6:13417584-13417706
Coord A exon
chr6:13410777-13410840
Coord C2 exon
chr6:13405776-13405780
Length
64 bp
Sequences
Splice sites
3' ss Seq
CTGTCCATTACGTGTCTAAGCAA
3' ss Score
-0.48
5' ss Seq
TAGGTGTGA
5' ss Score
2.17
Exon sequences
Seq C1 exon
GTACGTGATACGACTCAGGAACCTTGCGGACGACTATCATTTATGAAAGAGCCAAAATCTACAAGAGGCCTGGTGCACCAAGCTATTTGCAACTTAAACATCACCCTGCCAATTTATACGAAG
Seq A exon
CAAGGAGGTTGCTCCAAGGAAAGGACCATGCCTCTCAGCACAAGACTGTTTGTTTCATTGTTAG
Seq C2 exon
GTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002392-'93-108,'93-105,104-108=AN
Average complexity
A_S
Mappability confidence:
95%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.159 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000003097fB554
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTACATCGGGGATATGGGA
R:
ACCAGGTGACTTTTCAGGACAG
Band lengths:
139-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]