HsaEX0004137 @ hg38
Exon Skipping
Gene
ENSG00000145362 | ANK2
Description
ankyrin 2 [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr4:113353045-113363469:+
Coord C1 exon
chr4:113353045-113359299
Coord A exon
chr4:113360823-113360897
Coord C2 exon
chr4:113363338-113363469
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTTGACCTTCTCCAGATC
3' ss Score
9.78
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
TAGTTCTTTGGATTCAAAGACCAAATGCCCAGTAAAAACCCGAAGTTACACTGAGACAGAAACAGAGAGCAGAGAGAGGGCCGAGGAACTTGAGTTAGAATCAGAAGAAGGGGCCACAAGACCAAAGATACTTACATCCCGATTGCCAGTTAAGAGCAGAAGCACTACATCTTCCTGCAGGGGGGGCACGAGCCCCACAAAAGAAAGTAAGGAGCATTTCTTTGACCTTTACAGAAATTCCATAGAATTCTTTGAGGAGATTAGTGATGAGGCTTCCAAATTAGTGGATAGGCTGACACAGTCAGAGAGGGAGCAGGAAATAGTTTCAGACGATGAAAGTAGTAGTGCCCTGGAAGTATCAGTAATTGAAAATCTGCCACCTGTTGAGACCGAGCACTCAGTTCCTGAGGACATCTTTGACACAAGGCCCATTTGGGATGAGTCTATTGAGACTCTGATTGAACGCATCCCTGATGAAAATGGCCATGACCATGCTGAAG
Seq A exon
ATCCACAGGATGAGCAGGAACGGATCGAGGAAAGGCTGGCTTATATTGCTGATCACCTTGGCTTCAGCTGGACAG
Seq C2 exon
AATTAGCAAGAGAACTGGATTTCACTGAGGAGCAAATTCATCAAATTCGAATTGAAAATCCCAACTCTCTTCAAGACCAGAGTCATGCACTGTTGAAGTACTGGCTAGAGAGGGATGGGAAACATGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145362-'90-105,'90-102,92-105
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.867 A=0.392 C2=0.161
Domain overlap (PFAM):
C1:
NO
A:
PF0053117=Death=PU(19.0=61.5)
C2:
PF0053117=Death=FE(52.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGATTGAACGCATCCCTG
R:
TCCCATCCCTCTCTAGCCAGT
Band lengths:
169-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development