MmuEX6073976 @ mm9
Exon Skipping
Gene
ENSMUSG00000032826 | Ank2
Description
ankyrin 2, brain [Source:MGI Symbol;Acc:MGI:88025]
Coordinates
chr3:126640656-126650725:-
Coord C1 exon
chr3:126644528-126650725
Coord A exon
chr3:126642990-126643064
Coord C2 exon
chr3:126640656-126640787
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTTGACCTTCTGTAGATC
3' ss Score
9.08
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
TAGTTCCTTAGATGCTAAGACCAAATGCCCAGTGAAAGCCAGAAGTTACATTGAGACAGAGACGGAGAGCAGGGAGAGGGCCGAGGGGTTTGAGTCAGAATCAGAAGACGGGGCCACAAAACCAAAGCTCTTTGCATCCCGACTGCCGGTGAAGAGCAGGAGCACTTCATCTTCCGGCAGGCCAGGCACGAGCCCCACCAGAGAGAGCAGGGAGCACTTCTTTGACCTTTACCGAAACTCCATAGAATTCTTTGAGGAGATTAGTGATGAAGCTTCCAAATTAGTGGACAGGCTTACACAGTCAGAGAGGGAGCAGGAGCCACCTTCAGACGACGAAAGTAGCAGTGCCCTGGAAGTGTCAGTCATTGAGAGTCTGCCACCTGTTGACATTGAGCACTCAGCTCCCGAGGACATCTTTGACACAAGGCCCATTTGGGATGAGTCTATTGAGACTATGATTGAACGCATCCCTGATGAAAATGGCCATGACCGAGCTGAAG
Seq A exon
ATCCCCAAGATGAGCAGGAGCGGATGGAAGAAAGGCTGGCTTACATCGCTGATCACCTTGGCTTCAGCTGGACAG
Seq C2 exon
AATTAGCAAGAGAACTGGATTTCACTGAGGAGCAAATTCACCAAATTCGAATCGAGAACCCCAACTCCCTTCAAGATCAGAGCCACGCACTGCTCAAGTACTGGCTGGAGAGGGATGGGAAGCATGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032826-'56-55,'56-54,58-55=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.926 A=0.458 C2=0.218
Domain overlap (PFAM):
C1:
NO
A:
PF0053117=Death=PU(19.0=61.5)
C2:
PF0053117=Death=FE(52.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCCCGAGGACATCTTTGA
R:
AGGGAGTTGGGGTTCTCGATT
Band lengths:
171-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: