GgaEX6035125 @ galGal3
Exon Skipping
Gene
ENSGALG00000012044 | Q90716_CHICK
Description
NA
Coordinates
chr4:58301282-58305305:-
Coord C1 exon
chr4:58304212-58305305
Coord A exon
chr4:58302770-58302844
Coord C2 exon
chr4:58301282-58301413
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTCTTTGAACTTTAGATC
3' ss Score
9.26
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CATGGACCCAAAGACCAAACGTTCAATAAAAGCTAGGAGTTATGCAGAGGCAGAAGCAGAGACCTGGGAGAGGGAGAGAGAGTTAAAGGTTGAGCTAGACTCAGATGAGGCAACAGCAGCAAGACCCAAGGTATTTTCATCACGGGTGCCAGTTAAAAGCAGGAGCACTACAGCCTCCCGCACTGCTTTTAGTCCTACAAAAGAAAGTAAGGAACATTTTTTTGACCTGTATAAAAACTCCATAGAATTCTTTGAAGAAATTAGTGATGAAGCTTCTAAGTTAGTGGAAAGACTTACACAATCAGAAAGAGAACAAGAATTAGTTTCAGATGATGAAAGCAGTAGTGCCCTAGAAGTTTCAGTTATTGAAAACGTGCCATCCATTGAGACTCAGCAGTCAGTTCCTGAAGACATCTTTGACACCAGACCTATTTGGGATGAGTCTGTAGAGACTCAGATTGAACGTATACCTGATGACAATATCCATGACCATGCTGAAG
Seq A exon
ATCAACAGGATGATCGGGAACGGACTGAGGAAAGACTGGCCCACATTGCTGATCACCTTGGATTCAGTTGGACAG
Seq C2 exon
AGTTAGCAAGAGAACTGGATTTCACAGAAGAGCAAATTCATCAAATCAGGATTGAAAATCCTAATTCACTTCAAGACCAGAGCCATGCACTCCTCAAATACTGGCTTGAAAGGGATGGGAAACACGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044-'60-66,'60-65,62-66=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.820 A=0.500 C2=0.244
Domain overlap (PFAM):
C1:
NO
A:
PF0053117=Death=PU(19.0=61.5)
C2:
PF0053117=Death=FE(52.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACCAGACCTATTTGGGA
R:
GTGCATGGCTCTGGTCTTGAA
Band lengths:
173-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]