RnoEX6011479 @ rn6
Exon Skipping
Gene
ENSRNOG00000011076 | Ank2
Description
ankyrin 2 [Source:RGD Symbol;Acc:620156]
Coordinates
chr2:231240818-231250903:-
Coord C1 exon
chr2:231244673-231250903
Coord A exon
chr2:231242940-231243014
Coord C2 exon
chr2:231240818-231240949
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTATTTTTAACCTTCTATAGATC
3' ss Score
8.26
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
TAGCTCCTTGGATGCTAAGACCAAATGCCCAGTGAAAGCCAGAAGTTACATTGAGACAGAAACAGAGAGCAGGGAGAGGGCAGAGGGGTTTGAGTCAGAATCAGAAGAAGGGGCCACAAAACCAAAGCTCTTTGCATCCCGACTGCCGGTGAAGAGCAGAAGCACCTCATCTTCCAGCAGGACAGGCACGAGCCCCACAAGAGAGAGTAGGGAGCACTTCTTTGACCTTTACCGGAACTCCATAGAATTCTTTGAGGAGATTAGTGATGAGGCTTCCAAATTAGTAGACAGGCTTACACAGTCAGAAAGGGAGCAAGAGCCACCCTCAGACGACGAAAGTAGCAGTGCCCTGGAAGTGTCAGTCATTGAGAATCTGCCACCTGTTGACACTGAGCACTCAGCTCCTGAGGACATCTTTGACACAAGGCCCATTTGGGATGAGTCCATTGAGACTATGATTGAACGCATCCCTGATGAAAATGGCCATGACCGAGCTGAAG
Seq A exon
ATCCCCAGGATGAGCAGGAGCGGATGGAAGAGAGGCTGGCTTACATTGCAGATCACCTTGGCTTCAGCTGGACAG
Seq C2 exon
AATTAGCAAGGGAACTGGATTTCACTGAGGAGCAAATTCACCAAATTCGAATTGAGAACCCCAACTCCCTTCAAGATCAGAGTCATGCACTGCTCAAGTACTGGCTGGAGAGAGATGGGAAGCATGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011076-'90-82,'90-80,91-82=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=0.397 C2=0.195
Domain overlap (PFAM):
C1:
NO
A:
PF0053117=Death=PU(19.0=61.5)
C2:
PF0053117=Death=FE(52.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATCCCTGATGAAAATGGC
R:
GTGGCATGCTTCCCATCTCTC
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]