DreEX6007836 @ danRer10
Exon Skipping
Gene
ENSDARG00000043313 | ank2b
Description
ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
Coordinates
chr7:57612145-57618013:-
Coord C1 exon
chr7:57615980-57618013
Coord A exon
chr7:57615424-57615501
Coord C2 exon
chr7:57612145-57612276
Length
78 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCCTGGATATTGCAGTAG
3' ss Score
4.07
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
CACAGGCCCATTAATACCCACTATAACAAAGTCTTCCAAAGCAAAGAGCTTCTGTGAAAGTGATTCCAGCAAGAAACCAGCCAAAAAGGACCAGAATCGTCCAACAAGTACTGACCTATCCAGTACAACTAAGACACTTCCTTCAAGACTACCTGTCAGGGGAAAGCCCGGTCAGCCAATTCAAACATCCACACCAGCAAAACAAAAAAAGGGCCGCCCCACTCATACAAATAAAGAGCCTGTTGTATTTTTTGAAGAGATTAGTCAAGAGGCAGCTAAGGTAGTAGAGAGTTTGGCTCAGGCAGAGAAAGACAAACAGGAGGCTGCTGTCTTATCAGATGATGAAAGCAGCACCATCGATGTCTCTGTAATAGAGAATGAACCTTTCCTTGACATGAAAATGCCTTTCCCTGAAGATCCCTTGGTCATTAGGCCCAGATGGGACAACCCTGTTGAGACGCAGATGGAACGAATCCCTGCTGATAAAGTCCGAAGTCAAG
Seq A exon
TAGATCCACAGGATGAGGCAGACAGAAAAGAAAGTCGTCTGGCTGTGATAGCAAACCACCTTGGTTTCAGCTGGTCAG
Seq C2 exon
AATTGGCTCGAGAACTTGAATTTAGTGATGTACAGATCAATCAGATAAGAAATGAGAATCCAAATTCCTTACAAGACCAAAGCCATGCCCTCATAAGACTATGGAAAGAAAGGGAGGGAAAAAATGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043313-'65-62,'65-60,66-62=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.898 A=0.444 C2=0.511
Domain overlap (PFAM):
C1:
NO
A:
PF0053117=Death=PU(19.0=59.3)
C2:
PF0053117=Death=FE(52.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCTTGGTCATTAGGCCCA
R:
GGGCATGGCTTTGGTCTTGTA
Band lengths:
174-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]