BtaEX6030113 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017282 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr6:17663363-17669711:+
Coord C1 exon
chr6:17663363-17663416
Coord A exon
chr6:17667791-17667868
Coord C2 exon
chr6:17669673-17669711
Length
78 bp
Sequences
Splice sites
3' ss Seq
GAGTTAATCTTTACAAACAGGGA
3' ss Score
5.95
5' ss Seq
TTGGTACAG
5' ss Score
0.92
Exon sequences
Seq C1 exon
GGTTTCCCTGGTCCACGAGGCGAGAAGGGTGACCTGGGAGAAAAGGGGGAAAAG
Seq A exon
GGATTCCGTGGCGTTAAGGGGGAAAAAGGGGAGCCAGGCCAGCCTGGCCTGGATGGGCTGGATGCCCCTTGCCAATTG
Seq C2 exon
GGGCCAGATGGATTACCCATGCCTGGCTGTTGGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017282-'32-40,'32-39,36-40=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(9.9=50.0),PF0139113=Collagen=FE(23.0=100)
A:
PF0139113=Collagen=FE(33.8=100)
C2:
PF0139113=Collagen=PD(6.8=38.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTCCCTGGTCCACGAGG
R:
TGGGTAATCCATCTGGCCC
Band lengths:
73-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]