RnoEX0023095 @ rn6
Exon Skipping
Gene
ENSRNOG00000050706 | Col25a1
Description
collagen type XXV alpha 1 chain [Source:RGD Symbol;Acc:1590105]
Coordinates
chr2:235708669-235711272:+
Coord C1 exon
chr2:235708669-235708769
Coord A exon
chr2:235709236-235709313
Coord C2 exon
chr2:235711234-235711272
Length
78 bp
Sequences
Splice sites
3' ss Seq
GAGTTAATCTTTACAAACAGGGA
3' ss Score
5.95
5' ss Seq
TTGGTACAG
5' ss Score
0.92
Exon sequences
Seq C1 exon
CCTTGTATCCACAGGGGGAAAAGGGAAAGAAAGGCAAAAAAGGGCCTAAAGGGGAGAAAGGAGAACAGGGCGCTCCTGGATTAGATGCACCCTGCCCGTTG
Seq A exon
GGATTCCGTGGCGTTAAGGGGGAAAAGGGGGAGCCGGGCCAGCCTGGCCTGGATGGGCTGGATGCTCCTTGCCAATTG
Seq C2 exon
GACCCGGATGGATTACCTATGCCTGGATGCTGGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050706-'41-36,'41-35,42-36
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.952 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
PF0139113=Collagen=PD(36.5=88.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGTATCCACAGGGGGAAA
R:
GCCAGCATCCAGGCATAGGTA
Band lengths:
135-213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]