BtaEX6030564 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017704 | ABCG2
Description
Bos taurus ATP-binding cassette, sub-family G (WHITE), member 2 (ABCG2), mRNA. [Source:RefSeq mRNA;Acc:NM_001037478]
Coordinates
chr6:37994984-38005618:+
Coord C1 exon
chr6:37994984-37995136
Coord A exon
chr6:37997766-37997923
Coord C2 exon
chr6:38005467-38005618
Length
158 bp
Sequences
Splice sites
3' ss Seq
TAATGACATTTGTGTTTTAGGTT
3' ss Score
9.26
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GATGATGTTGTGATGGGAACTCTGACAGTGAGAGAAAACTTACAGTTCTCAGCAGCCCTTCGGCTTCCAACAACTATGACAAGTTACGAAAAAAATGAACGGATTAACAAGGTTATTCAAGAGTTAGGTCTGGATAAAGTGGCAGATTCCAAG
Seq A exon
GTTGGAACTCAGTTTATCCGTGGTGTGTCTGGAGGAGAAAGAAAAAGGACTAGTATTGCAATGGAGCTTATTACTGATCCATCCATCTTGTTCCTGGATGAGCCCACAACTGGCTTAGATTCAAGCACAGCAAATGCTGTCCTTTTGCTCCTGAAGAG
Seq C2 exon
GATGTCTAAACAAGGACGGACAATCATCTTCTCCATTCATCAGCCTCGTTATTCCATCTTCAAGTTGTTTGATAGCCTCACCTTGTTGGCCTCGGGAAGACTCATGTTCCACGGGCCTGCTCAGGAGGCCTTGGGGTACTTTGGAGCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017704-'19-11,'19-9,20-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.004 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(33.1=100)
A:
PF0000522=ABC_tran=PD(23.8=67.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCGGCTTCCAACAACTA
R:
TCCAAAGTACCCCAAGGCCTC
Band lengths:
243-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]