RnoEX6013722 @ rn6
Exon Skipping
Gene
ENSRNOG00000007041 | Abcg2
Description
ATP binding cassette subfamily G member 2 [Source:RGD Symbol;Acc:631345]
Coordinates
chr4:88862846-88866921:+
Coord C1 exon
chr4:88862846-88862998
Coord A exon
chr4:88864454-88864611
Coord C2 exon
chr4:88866770-88866921
Length
158 bp
Sequences
Splice sites
3' ss Seq
AAAGATGGCACTTGCTTTAGGTT
3' ss Score
4.21
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GATGACGTTGTGATGGGCACCCTGACAGTGAGAGAAAACTTACAGTTCTCAGCAGCTCTTCGCCTTCCAAAAGCTATGAAGACGCATGAAAAAAATGAACGGATTAACACGATCATTAAAGAGTTAGGCCTGGACAAAGTAGCAGATTCCAAG
Seq A exon
GTTGGAACTCAGTTTACCCGTGGTATCTCTGGAGGAGAAAGAAAAAGGACAAGCATAGGAATGGAGCTCATCACTGACCCTTCCATCCTCTTCCTGGATGAGCCCACAACTGGTTTGGACTCAAGCACAGCAAATGCTGTCCTTTTGCTCCTGAAAAG
Seq C2 exon
GATGTCTAAACAGGGCCGGACCATCATCTTCTCCATTCACCAGCCTCGGTATTCCATCTTTAAGTTGTTTGACAGCCTCACCTTACTGGCTTCTGGGAAACTCATGTTTCATGGCCCAGCACAGAAGGCCTTGGAGTACTTTGCATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007041-'14-10,'14-9,15-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.057 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(33.1=100)
A:
PF0000522=ABC_tran=PD(23.8=67.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCTCAGCAGCTCTTCGC
R:
GTACTCCAAGGCCTTCTGTGC
Band lengths:
250-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]