GgaEX1005641 @ galGal4
Exon Skipping
Gene
ENSGALG00000005792 | ABCG2
Description
ATP-binding cassette, sub-family G (WHITE), member 2 (Junior blood group) [Source:HGNC Symbol;Acc:HGNC:74]
Coordinates
chr6:17107645-17109671:+
Coord C1 exon
chr6:17107645-17107797
Coord A exon
chr6:17108486-17108643
Coord C2 exon
chr6:17109520-17109671
Length
158 bp
Sequences
Splice sites
3' ss Seq
TGCCCAACTTCTGCTTGTAGGTA
3' ss Score
8.38
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
GATGATGTTGTCATGGGCACAATGACAGTGAGGGAGAACCTGCACTTCTCTGCTGCCCTCCGGCTCCCCAGCTCCATCAGCTTTCAAGAGAAGGAAGAACGAGTCACACAGATAATTGGCGAGCTGGGATTAAGCAAAGTGGCTGATGCTAAG
Seq A exon
GTAGGAACTGAATTGATCCGTGGAGTGTCTGGAGGGGAACGGAAAAGAACCAACATCGGGATGGAGCTCATCACAGAGCCACCAGTGCTTTTTCTGGATGAGCCAACAACAGGCCTTGATGCCAGCACGGCCAATGCTGTCCTCATCCTCTTGAAGAA
Seq C2 exon
GCTCTCTAGAAGAGGCCGAACCATCATATTTTCCATCCATCAGCCCCGCTATTCCATATTCAAGCTGTTTGACAGTCTGACATTACTAGCTTTGGGTAAAGTGCTGTACCATGGTCCTGCAAAACAGGCCCTGGAGTATTTTAGTTCTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005792-'5-7,'5-5,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(33.1=100)
A:
PF0000522=ABC_tran=PD(23.8=67.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACCTGCACTTCTCTGCTG
R:
ATACTCCAGGGCCTGTTTTGC
Band lengths:
258-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]