MmuEX6004589 @ mm10
Exon Skipping
Gene
ENSMUSG00000029802 | Abcg2
Description
ATP-binding cassette, sub-family G (WHITE), member 2 [Source:MGI Symbol;Acc:MGI:1347061]
Coordinates
chr6:58665104-58669338:+
Coord C1 exon
chr6:58665104-58665256
Coord A exon
chr6:58666882-58667039
Coord C2 exon
chr6:58669187-58669338
Length
158 bp
Sequences
Splice sites
3' ss Seq
AAAGGTGACACTTGCTTTAGGTC
3' ss Score
4.45
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GATGACGTTGTGATGGGCACCCTGACAGTGAGAGAAAACTTACAGTTCTCAGCAGCTCTTCGACTTCCAACAACTATGAAGAATCATGAAAAAAATGAACGGATTAACACAATCATTAAAGAGTTAGGTCTGGAAAAAGTAGCAGATTCTAAG
Seq A exon
GTCGGAACTCAGTTTATCCGTGGCATCTCTGGAGGAGAAAGAAAAAGGACAAGCATAGGGATGGAGCTGATCACTGACCCTTCCATCCTCTTCCTGGATGAGCCCACGACTGGTTTGGACTCAAGCACAGCGAATGCTGTCCTTTTGCTCCTGAAAAG
Seq C2 exon
GATGTCTAAACAGGGTCGAACAATCATCTTCTCCATTCATCAGCCTCGGTATTCCATCTTTAAGTTGTTTGACAGCCTCACCTTACTGGCTTCCGGGAAACTCGTGTTCCATGGGCCAGCACAGAAGGCCTTGGAGTACTTTGCATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029802-'32-31,'32-30,33-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(33.1=100)
A:
PF0000522=ABC_tran=PD(23.8=67.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCAGCTCTTCGACTTCC
R:
GTACTCCAAGGCCTTCTGTGC
Band lengths:
245-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types