DreEX0010211 @ danRer10
Exon Skipping
Gene
ENSDARG00000100075 | abcg2a
Description
ATP-binding cassette, sub-family G (WHITE), member 2a [Source:ZFIN;Acc:ZDB-GENE-050517-35]
Coordinates
chr23:46065230-46080583:+
Coord C1 exon
chr23:46065230-46065429
Coord A exon
chr23:46076175-46076332
Coord C2 exon
chr23:46080432-46080583
Length
158 bp
Sequences
Splice sites
3' ss Seq
ATGATTGGCTTTTTGTGAAGGTG
3' ss Score
4.73
5' ss Seq
GAAGTGCGT
5' ss Score
4.88
Exon sequences
Seq C1 exon
ATACAGCAGAAGATGGCGGACACCAGAGTGGAGCTGACCGGAGTGCTGGATCTGCAGAATCATGTGAACACCGGCGTGTCCTCATCCCCGTCCCGCCGCGGCGCCACCGTCAGCTTCCACAACATCAACTACAGCCTGAAGATGAAGAGCGGCTTCTGCAAGAGCAAGAGCACCAAAAAAAACATCCTCATCGGACTCAA
Seq A exon
GTGGGGACGCAGCTGATTCGTGGAGTTTCGGGAGGCGAGCGGAAGAGGACGAACATCGGTATGGAGCTGATTATCGATCCGCCGGTGCTGTTTCTGGATGAACCCACGACCGGTCTGGACGCTAGCACTGCTAACTCTGTGCTAATGCTGCTGAAGAA
Seq C2 exon
AATGGGTAACAACGGGCGCACCATCATCCTCTCCATCCACCAGCCCAGATACTCCATCTATCGACTCTTCGACAGCCTGACGCTGCTGGTGGGAGGAAAACTGGTGTACCATGGCCCGGCACAGGACGCACTCTCATACTTCAGCCAGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100075_MULTIEX1-4/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(0.7=1.6)
A:
PF0000522=ABC_tran=PD(24.5=67.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATCATGTGAACACCGGCG
R:
CAGTTTTCCTCCCACCAGCAG
Band lengths:
248-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]