BtaEX6034841 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006214 | LOXL2
Description
lysyl oxidase homolog 2 precursor [Source:RefSeq peptide;Acc:NP_001092523]
Coordinates
chr8:71278583-71285742:-
Coord C1 exon
chr8:71285606-71285742
Coord A exon
chr8:71280329-71280440
Coord C2 exon
chr8:71278583-71279556
Length
112 bp
Sequences
Splice sites
3' ss Seq
CTGAACTGACTCTCCCCCAGGTT
3' ss Score
8.11
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
ACATCCAGAAGAGTTACGAGTGCGCCAACTTTGGTGAGCAGGGCATCACCATGGGCTGCTGGGACATGTACCGTCATGACATCGACTGCCAGTGGGTCGACATCACCGACGTGCCTCCTGGAGACTACCTGTTCCAG
Seq A exon
GTTGTCATCAATCCCAACTACGAGGTGGCGGAGTCTGACTACACCAACAACATCATGAAGTGCAGGACCCGGTATGATGGCCACCGCATCTGGATGTACAATTGTCACATAG
Seq C2 exon
GTGGTTCCTTCAGTGAAGAGACGGAAAAAAAGTTTGAGCACTTCAGTGGACTCATAAATAACCAGGTCTCCAAGCGGTAAAGTGGCAACATGGTCATCTCCTGCCTTCAGGCCACGGGCATCTCCCCCAAGAACTGCAGTCTGACCGGATATCACCCTGCTCCCCCTCATCCAGCCCGGCCCTGCCCATCTCGACCCCCTGCAGCCCTCGGCCAAGCTCAGGAGGAAGGCGAGGAAGGCATGTTCCTGACACCTGCAGCCTGGGACAGCCTCCGGGGCTGGGGCTCGTCCACGGGGCGGTGGGGACCAGCGCCAACTAAGAGCCATCCTGGCTGGGACCACGGGCACACAGGTGGTCAGCTGCTTGTCCCGTCCAAGGCGTGGTCCACTCCAAGCCTCATCACCTGCCCGGCTCACCACAGATAACATGGGGCCATTTTCTTCTCAAGTTACATGTTGGCAACGTGGGTTAGCAGCCCAAGGAGGCCAGGCTGGATCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006214-'22-25,'22-23,23-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0118612=Lysyl_oxidase=FE(22.1=100)
A:
PF0118612=Lysyl_oxidase=FE(18.1=100)
C2:
PF0118612=Lysyl_oxidase=PD(1.0=7.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTTGGTGAGCAGGGCATC
R:
ACTGCAGTTCTTGGGGGAGAT
Band lengths:
251-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]