MmuEX6042415 @ mm9
Exon Skipping
Gene
ENSMUSG00000034205 | Loxl2
Description
lysyl oxidase-like 2 [Source:MGI Symbol;Acc:MGI:2137913]
Coordinates
chr14:70089941-70093053:+
Coord C1 exon
chr14:70089941-70090077
Coord A exon
chr14:70092121-70092232
Coord C2 exon
chr14:70092847-70093053
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTTGATCCTCTCCAGGTT
3' ss Score
10.14
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
ACATTCAGAAGAGTTACGAGTGTGCCAACTTTGGAGAACAAGGCATCACCATGGGCTGCTGGGACATGTACCGTCATGACATTGACTGCCAGTGGATAGACATCACCGATGTGCCCCCTGGAGACTACCTGTTCCAG
Seq A exon
GTTGTCATTAACCCCAACTATGAAGTGCCAGAATCAGATTTCTCTAACAACATCATGAAGTGCAGGAGCCGCTATGATGGCTACCGCATCTGGATGTACAACTGTCACGTAG
Seq C2 exon
GTGGAGCCTTCAGTGAGGAGACAGAACAGAAGTTCGAACACTTCAGTGGACTTCTAAATAACCAGCTCTCTGTACAGTAAAGAAGATCCTGGGCCAGGCATGATGGCTCATGCCTGTAATCCCTGCACTCATGCTGAGGCAGGAGGATTGCCACAAGATTTCCACTCTGGACATTAAACCAAGCTTCAGTTTCAAAAGAAATGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034205-'16-18,'16-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0118612=Lysyl_oxidase=FE(22.1=100)
A:
PF0118612=Lysyl_oxidase=FE(18.1=100)
C2:
PF0118612=Lysyl_oxidase=PD(1.0=7.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGCTGCTGGGACATGTA
R:
ATCTTGTGGCAATCCTCCTGC
Band lengths:
246-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: