DreEX0043430 @ danRer10
Exon Skipping
Gene
ENSDARG00000044010 | loxl2a
Description
lysyl oxidase-like 2a [Source:ZFIN;Acc:ZDB-GENE-070818-1]
Coordinates
chr10:20448331-20453096:-
Coord C1 exon
chr10:20452960-20453096
Coord A exon
chr10:20452010-20452121
Coord C2 exon
chr10:20448331-20450574
Length
112 bp
Sequences
Splice sites
3' ss Seq
CGTCTCTTTCTGACACACAGGTG
3' ss Score
7.79
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTATTTCGAAGCGTTACCATTGTGCTAACTTTGGTGAACAGGGCATCACTGTTGGCTGCTGGGACACTTACAGACATGACATTGATTGTCAGTGGATTGATGTCACGGATGTCAAACCAGGAGACTACATTTTCCAG
Seq A exon
GTGGTAATCAATCCAAACTATGACGTCGCTGAATCAGATTACACCAACAACGTCATGAAGTGCAAGTGCCGCTATGATGGATACAGGATATGGACATACAGCTGTCATATAG
Seq C2 exon
GTGGCTCACGGAGTTCAGACATGGATGAATACTCAGGAATGAGCAACCAGCTGAACCACCTCAGATAGGAGACGATGAGCGACGGACAAAGGCTCTCGGTGGAGGACACTGCAGGATGTCATGTAGACCAATATTCAAATATGATTGACCACTAGAGAGACTCCAGCACTTCAACAGCAGATCCACTGCTCTTTAACTGACCACCGAGTATAGAAGTATGTTCTTTCCTGATCCTCGTGCGCTGCAGAAGCTATTTAACTTCCTAAGATGTACTGTATTTATTGCATTTCTGTGCTTGACTTCTAGATAGTCCATCCAAAAATGAAAAAGTGAGGCATTGTTTACTCACTTTGGTGCTGTTCTCATGAAAAATTAACTATTGTTGTTATATAGTAGAAGTGTGGTAACCATTCATTTTGGATGCAGTGATGAGGTATGTTTAAGCACAATTTTACTGTCATGGTTTAATGTTTGCCACTTGAAGTTTTATGTAAATTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044010-'13-17,'13-16,14-17
Average complexity
S
Mappability confidence:
80%=75=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0118612=Lysyl_oxidase=FE(22.2=100)
A:
PF0118612=Lysyl_oxidase=FE(18.2=100)
C2:
PF0118612=Lysyl_oxidase=PD(1.0=8.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAGCGTTACCATTGTGCT
R:
ACATGACATCCTGCAGTGTCC
Band lengths:
256-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]