GgaEX1033673 @ galGal4
Exon Skipping
Gene
ENSGALG00000000402 | LOXL2
Description
lysyl oxidase-like 2 [Source:HGNC Symbol;Acc:HGNC:6666]
Coordinates
chr22:1238731-1241702:+
Coord C1 exon
chr22:1238731-1238867
Coord A exon
chr22:1239476-1239587
Coord C2 exon
chr22:1240328-1241702
Length
112 bp
Sequences
Splice sites
3' ss Seq
GTTTCTCCATCACTCCCAAGGTC
3' ss Score
7.26
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATGTGCAAAAACAGTACGAATGTGCCAATTTTGGGGAACAAGGGATCACTGTTGGCTGCTGGGATGTGTACCGACACGACATTGACTGCCAATGGATCGACATCACCGACGTCCCACCAGGAGATTACCTCTTCCAG
Seq A exon
GTCGTCATCAACCCCAACTATGAAGTGGCTGAATCTGACTACTCCAACAACGTGATGAAATGCCGGAGTCGGTACGACGGGCAGCGCATCTGGATGTACAACTGCCACACAG
Seq C2 exon
GTGGCTCCTTCAGCGACGAAACAGAACAGAAGTTCGACCACTTCAGTGGACTCACAAATAACAAAGTGTCCACCCGATAGAGCAGCACTGCCTCCCATCCCACTATTTAAAGAAGCGAGGCTTCCCGCTGCGGTGATTCCCCCAACCACTGCGCCAAGAGAAAAGAAATCAAGCAATCAAACTCTAAATTAGCAAGGTAAATTATTTTCTAAAGCTGCCTTCCTTCCCGGTGTAAATGCTTGGATCACCTCTTGTAATTCCCATCCCCACTGCTGAGGATGTTGGGAGCAGGCTTTCAAACTCTACTGGGCTCCAACCTACCCCACCAGGACTTCTCCCTCCGTTTTGCAGGACCATCTTTATGTGTGTGCACAGCTCCGGGCTGCAGTGAGCACAGTTTGCCTTTGGTTGGGTATCAACAACCTCAATGGGTCTTTACCATTCATTTTCTTCAAATTTCGGTACTTTTAAGCTCAAGCTGAAGCACCATCGACGCATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000402-'13-12,'13-11,14-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0118612=Lysyl_oxidase=FE(22.1=100)
A:
PF0118612=Lysyl_oxidase=FE(18.1=100)
C2:
PF0118612=Lysyl_oxidase=PD(1.0=7.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCTGCTGGGATGTGTAC
R:
TTTTCTCTTGGCGCAGTGGTT
Band lengths:
251-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]