BtaEX6036167 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000575 | TNC
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr8:105988315-106012260:-
Coord C1 exon
chr8:106011988-106012260
Coord A exon
chr8:105989551-105989673
Coord C2 exon
chr8:105988315-105988458
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTGTGCTTTCTCCTCAACAGCCA
3' ss Score
9.55
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
GAGACACTCCCCACTTGGGAGAGGTCACGGTGTCCGAGGTGGGCTGGGAGGCCCTCAAACTCAACTGGACGGCTCCAGAAGGGGTCTACGAGCAGTTTCTCATTCAGGTGCAGGAGCCTGGCAAGGAGGAGGCAGCCCAGAACCTCACTGTCCCGGGAGGGCTGAGGTCCGTGGACCTGCCTGGGCTCAAGGCAGCCACTCACTATAGCATCACCATCCGTGGGGTCACTCGGGACTTCAGCACAGCCCCTCACTCTGTTGAAGCCTTAACAG
Seq A exon
CCATGGGCTCCCCGAAGGAAATCATTTTCTCAGACATCACTGAAAACGCAGCCAGTGTCAGCTGGATGGCACCCACTACCCAGGTGGAGAGCTTCCGGGTCACCTATGTGCCCATTGCAGGAG
Seq C2 exon
GTGCGCCCTCAGCGGTGACTGTGGATGGGACCAAGACCCAGACCAGGCTGCTGAGACTCTTACCTGGAGCAGATTACCTGGTCAGCGTCATCGCCCTGAAGGGCTTTGAGGAAAGCGAGCCTGTCTCGGGGACGCTCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000575-'13-23,'13-22,24-23=AN
Average complexity
A_C2
Mappability confidence:
89%=86=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=0.000 C2=0.163
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=88.0)
A:
PF0004116=fn3=PU(48.8=92.9)
C2:
PF0004116=fn3=PD(50.0=81.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCAAACTCAACTGGACGG
R:
TCTTGGTCCCATCCACAGTCA
Band lengths:
258-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]