GgaEX6014929 @ galGal4
Exon Skipping
Gene
ENSGALG00000007113 | TNC
Description
tenascin precursor [Source:RefSeq peptide;Acc:NP_990787]
Coordinates
chr17:2648840-2654256:-
Coord C1 exon
chr17:2653984-2654256
Coord A exon
chr17:2649763-2649885
Coord C2 exon
chr17:2648840-2648983
Length
123 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTTCTCCACTGACAGTTG
3' ss Score
9.01
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
AGGCAGAACCCGAGGTGGACAACCTTCTGGTTTCAGATGCTACCCCTGACGGCTTCCGTCTGTCCTGGACTGCAGATGATGGGGTTTTCGACAGTTTTGTTCTAAAAATCAGGGATACCAAAAGGAAATCTGATCCACTGGAACTCATAGTACCAGGCCATGAGCGCACCCATGATATAACAGGGCTGAAAGAGGGCACTGAGTATGAAATTGAGCTCTATGGAGTTAGCAGTGGACGGCGCTCCCAACCCATAAATTCAGTAGCAACCACAG
Seq A exon
TTGTGGGATCTCCCAAGGGAATCTCTTTCTCGGACATCACAGAAAACTCTGCTACAGTCAGCTGGACGCCCCCCCGCAGCCGTGTGGATAGCTACAGGGTCTCCTATGTCCCCATCACAGGCG
Seq C2 exon
GCACTCCCAATGTTGTTACAGTTGATGGAAGCAAGACAAGGACAAAGCTGGTGAAGTTAGTCCCAGGTGTAGACTACAACGTTAATATCATCTCTGTGAAAGGCTTTGAAGAAAGCGAACCCATTTCTGGAATTCTGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007113-'24-23,'24-22,26-23=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.272 A=0.048 C2=0.061
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=88.0)
A:
PF0004116=fn3=PU(48.8=92.9)
C2:
PF0004116=fn3=PD(50.0=81.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTGCAGATGATGGGGTTT
R:
CCAGCTTTGTCCTTGTCTTGC
Band lengths:
258-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]