DreEX6011164 @ danRer10
Exon Skipping
Gene
ENSDARG00000021948 | tnc
Description
tenascin C [Source:ZFIN;Acc:ZDB-GENE-980526-104]
Coordinates
chr5:27972524-27983465:-
Coord C1 exon
chr5:27983190-27983465
Coord A exon
chr5:27975305-27975427
Coord C2 exon
chr5:27972524-27972667
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTCATTTCTCCCAAGGGC
3' ss Score
8.23
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ATGAGGAGAAGCCTCAGGTGGGCAACATCACCATCTCTGATGTGTCTTGGGACAGCTTCAGTATGTCCTGGGATCTGGACAGAGGAGAGGTTGAGGGATTTCTGATTGAAGTGTCTGACCCAGATGGCTTATCTGATGGCCAGAACCACACACTGTCTGGCCAGGAGTTCAGCCTGGCTGTCACTGACCTCTCTCCTAGTACTTTCTACAGGGTCACACTGTACGGGCTGTACAAGGGAGAGCTCTTAGACCCTGTCTTTGCCGAAGCCATCACAG
Seq A exon
GGCTTGGAACACCGAAGGGAATACGCTTTTCTGATGTGACCGATACATCAGCTACTGTTCACTGGACTATGCCACATACCCGTGTAGACAACTACAGGGTCATCTATGTGCCCATTCAGGGTG
Seq C2 exon
GCAGTCCTCTGACACTGAGAGTGGATGGAGGAGAGTCTCAAGCCATGCTCTCCAATCTGACCCCTGGTGTCACCTACCAGGTCACGGTCATCGCTGTTAAGGGCTTGGAGGAGAGTGAACCCGGATCTGAAAGGGTCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021948-'14-22,'14-21,17-22=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=0.024 C2=0.141
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=86.0)
A:
PF0004116=fn3=PU(48.1=92.9)
C2:
PF0004116=fn3=PD(49.4=83.3)
Main Skipping Isoform:
ENSDART00000131729fB6719
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGAGGAGAGGTTGAGGG
R:
AGCATGGCTTGAGACTCTCCT
Band lengths:
249-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]