MmuEX0048234 @ mm10
Exon Skipping
Gene
ENSMUSG00000028364 | Tnc
Description
tenascin C [Source:MGI Symbol;Acc:MGI:101922]
Coordinates
chr4:63975202-63982923:-
Coord C1 exon
chr4:63982651-63982923
Coord A exon
chr4:63976446-63976568
Coord C2 exon
chr4:63975202-63975345
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTCTCCTTAACAGCCA
3' ss Score
10.04
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
AAGCTGAACCGGAAGTTGACAACCTTCTAGTTTCAGATGCCACTCCAGACGGTTTCCGTCTGTCCTGGACTGCTGATGAAGGGATATTCGACAGTTTTGTTATCAGGATCAGAGATACCAAAAAGCAATCTGAGCCACAAGAAATATCCCTCCCTTCCCCCGAACGTACCAGGGACATAACAGGTCTCAGAGAGGCCACTGAGTACGAAATTGAACTCTATGGAATAAGCCGCGGAAGGCGATCCCAGCCAGTCAGTGCCATAGCAACAACAG
Seq A exon
CCATGGGTTCTCCGAAGGAAATCATGTTCTCAGACATCACTGAAAATGCAGCCACAGTCAGCTGGAGGGCACCTACTGCTCAGGTGGAGAGTTTCCGGATCACTTATGTACCTATGACAGGAG
Seq C2 exon
GTGCCCCGTCCATGGTGACTGTGGATGGAACAGATACTGAGACCAGGCTGGTGAAGCTTACCCCGGGTGTAGAGTACCGCGTCAGTGTGATTGCCATGAAGGGATTCGAAGAAAGCGATCCAGTCTCGGGGACTCTAATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028364-'27-37,'27-36,34-37
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.380 A=0.048 C2=0.245
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=88.0)
A:
PF0004116=fn3=PU(48.8=92.9)
C2:
PF0004116=fn3=PD(50.0=81.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCGTCTGTCCTGGACTG
R:
CATCCACAGTCACCATGGACG
Band lengths:
249-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types