BtaEX6036249 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016958 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr8:112152889-112155396:-
Coord C1 exon
chr8:112155296-112155396
Coord A exon
chr8:112154617-112154765
Coord C2 exon
chr8:112152889-112152984
Length
149 bp
Sequences
Splice sites
3' ss Seq
GGGCCCTCATCTCCCCGCAGAAA
3' ss Score
9.46
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
GTTACCACCAGCAGTGCCACATCCCCATAGCGGGCAGTGCCGACCGGCCCCTGCTCACACCTTGGTTCTGCCGACGCTGCATCTTCGCGCTGGCTGTGCGG
Seq A exon
AAAGGCGGCGCGCTGAAGAAGGGCGCCATCGCCAGGACGCTGCAGGCCGTGAAGATGGTGCTGTCCTACCAGCCCGAGGAGCTCGAGTGGGACTCCCCCCACCGCACCAACCAGCAGCAGTGCTACTGCTACTGCGGCGGTCCTGGAGA
Seq C2 exon
ATGGTACCTGCGGATGCTGCAGTGTTACCGCTGCAGGCAGTGGTTCCACGAGGCCTGCACCCAGTGTCTCAATGAGCCCATGATGTTCGGTGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016958-'3-6,'3-3,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF144461=Prok-RING_1=PD(31.0=38.2),PF0062824=PHD=PD(53.7=85.3)
A:
PF0062824=PHD=PU(15.1=16.0)
C2:
PF0062824=PHD=FE(60.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCACCAGCAGTGCCACAT
R:
GTCACCGAACATCATGGGCTC
Band lengths:
194-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]