GgaEX1043368 @ galGal4
Exon Skipping
Gene
ENSGALG00000001595 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr17:8290999-8291636:-
Coord C1 exon
chr17:8291536-8291636
Coord A exon
chr17:8291314-8291462
Coord C2 exon
chr17:8290999-8291094
Length
149 bp
Sequences
Splice sites
3' ss Seq
CGTCCCGCTGCCTCCCGCAGAAA
3' ss Score
10.1
5' ss Seq
CGAGTAAGC
5' ss Score
6.91
Exon sequences
Seq C1 exon
GTTACCATCAGCAGTGCCATGTCCCGGTGGCGAGCAGTGATGAGGGCCCGTTGGGGACGCCGTGGTTCTGCCGCCGCTGCATCTTCGCCCTGGCCGTGCGG
Seq A exon
AAAGGGGGTGCCCTGAAGAAGGGAGCCATTGCCAAGACACTGCAAGCCGTCAAGATGGTGCTGTCCTACAACCCCGACCTGCTGGAGTGGGACTCTCCGCACCGCACCAACCAACAGCAGTGCTACTGCTACTGCGGGGGCCCTGGCGA
Seq C2 exon
GTGGTACCTGAAGATGCTGCAGTGCTACCGCTGCCGGCAGTGGTTCCATGAGGCGTGCACTCAGTGCCTCAGTGACCCCATGATGTTCGGGGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001595-'8-6,'8-4,9-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(30.0=44.1),PF144461=Prok-RING_1=PD(29.3=35.3),PF0062824=PHD=PD(53.7=85.3)
A:
PF0062824=PHD=PU(15.1=16.0)
C2:
PF0062824=PHD=FE(60.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCATCAGCAGTGCCATGTC
R:
GATCCCCGAACATCATGGGGT
Band lengths:
194-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]