HsaEX0046987 @ hg38
Exon Skipping
Gene
ENSG00000119403 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr9:120866870-120869945:-
Coord C1 exon
chr9:120869845-120869945
Coord A exon
chr9:120869182-120869330
Coord C2 exon
chr9:120866870-120866965
Length
149 bp
Sequences
Splice sites
3' ss Seq
GGGCCCTCGTCTCCCCCCAGAAA
3' ss Score
8.42
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
GTTACCACCAGCAGTGCCACATCCCCATAGCGGGCAGTGCTGACCAGCCCCTGCTCACACCTTGGTTCTGCCGACGCTGCATCTTCGCACTGGCTGTGCGG
Seq A exon
AAAGGCGGCGCGCTGAAGAAGGGCGCCATCGCCAGGACGCTGCAGGCCGTGAAGATGGTGCTGTCCTACCAGCCCGAGGAGCTCGAGTGGGACTCGCCCCATCGCACCAACCAGCAGCAATGCTACTGCTACTGCGGCGGGCCCGGAGA
Seq C2 exon
ATGGTACCTGCGGATGCTGCAATGTTACCGGTGCAGGCAGTGGTTCCACGAGGCCTGCACCCAGTGCCTCAATGAGCCCATGATGTTTGGAGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119403-'17-22,'17-13,20-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF144461=Prok-RING_1=PD(31.0=38.2),PF0062824=PHD=PD(53.7=85.3)
A:
PF0062824=PHD=PU(15.1=16.0)
C2:
PF0062824=PHD=PU(67.5=96.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCACCAGCAGTGCCACAT
R:
CGGTCTCCAAACATCATGGGC
Band lengths:
196-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development