RnoEX0065324 @ rn6
Exon Skipping
Gene
ENSRNOG00000018874 | Phf19
Description
PHD finger protein 19 [Source:RGD Symbol;Acc:1310390]
Coordinates
chr3:13967582-13970135:-
Coord C1 exon
chr3:13970035-13970135
Coord A exon
chr3:13969303-13969451
Coord C2 exon
chr3:13967582-13967677
Length
149 bp
Sequences
Splice sites
3' ss Seq
TGGGTCCTATCTCCCCCTAGAAA
3' ss Score
10.52
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
GTTACCACCAACAGTGCCACATCCCCATAGCAGTCGATGCCAACTGGCCCCTCCTCACTCACTGGTTCTGCCGACGCTGCATTTTCGCACTGGCTGTGAGG
Seq A exon
AAAGGCGGTGCGCTGAAGAAAGGCGCCATCGCCAAGACGCTGCAGGCAGTGAAAATGGTGCTGTCCTACCAGCCTGAGGAGCTCGATTGGGATTCGCCCCATCGCACCAACCAGCAGCAATGCTACTGCTACTGCGGCGGGCCTGGAGA
Seq C2 exon
GTGGTACTTACGGATGCTACAGTGCTACCGGTGTAGGCAGTGGTTCCATGAAGCCTGTACACAGTGCCTAAGTGAGCCTATGGTGTTTGGAGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018874-'4-8,'4-6,5-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(23.9=32.4),PF144461=Prok-RING_1=PD(25.6=29.4),PF0062824=PHD=PD(53.7=85.3)
A:
PF0062824=PHD=PU(15.1=16.0)
C2:
PF0062824=PHD=FE(60.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACCACCAACAGTGCCACA
R:
CGGTCTCCAAACACCATAGGC
Band lengths:
197-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]