BtaEX6036251 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016958 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr8:112146934-112149253:-
Coord C1 exon
chr8:112149186-112149253
Coord A exon
chr8:112147800-112147961
Coord C2 exon
chr8:112146934-112147021
Length
162 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCTGCCCACCCCCAGGTT
3' ss Score
9.61
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CTCACCAGCACCCCTGTGACGGACCGAGGCCCACATCTCCTCAATGCACTGAATAGTTACAAGAGCCG
Seq A exon
GTTCCTCTGCGGCAAGGAGATCAAGAAGAAGAAGTGCATCTTCCGCCTGCGCATCCGTGTCCCACCCAACCCGCCCGGGAAGCTGCTGCCCGACAAGGGCCTGGCGCCCCCCGAGCACGGCGCCGCCTCCGAGCTGCGGAGGAGAGGGAAGAGCAAGCCCAG
Seq C2 exon
TTTGTTGCCTCATGAATTCCAGCAGCAGAAAAGGCGAGTTTATAGAAGAAAAAGATCAAAGTTTTTGCTGGAAGACGCTATCCCCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016958-'11-13,'11-11,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.491 C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACCAGCACCCCTGTGA
R:
ACTGGGGATAGCGTCTTCCAG
Band lengths:
156-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]