GgaEX7009846 @ galGal4
Exon Skipping
Gene
ENSGALG00000001595 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr17:8289449-8289941:-
Coord C1 exon
chr17:8289874-8289941
Coord A exon
chr17:8289614-8289778
Coord C2 exon
chr17:8289449-8289536
Length
165 bp
Sequences
Splice sites
3' ss Seq
GAAGGCCGCTTCCTCCCCAGGTT
3' ss Score
7.19
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CTGACCGGCACCCCTGTGTCTGAGCGTGGCCCCCACCTGCTCAATGCCCTCAACAGCTACAAAAGCAG
Seq A exon
GTTTCTGTGCGGAAAGGAGATCAAGAAGAAGAAATGCATCTTCCGCCTGCGGATCCGCGTCCCGCCAAACCCCCCCAGCAAAGTGCTGCCAGAGAAGGCCCCGGGCGAGGGCAGCTCCTGCGAGCTGAAGAGGAGAGGGAAGAGCAGATACGTGCACAAGGACAG
Seq C2 exon
CCTGCTCCCGGGGCAGCTCCAGCAGCAGAAGCGGCGTGCGGTGCGGTGGAAGAGGGCCAAGTTCCTGCTGGAGGACGCCATCCCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001595-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.339 C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCACCCCTGTGTCTGAG
R:
GGATGGCGTCCTCCAGCAG
Band lengths:
146-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]