DreEX6048582 @ danRer10
Exon Skipping
Gene
ENSDARG00000078050 | phf19
Description
PHD finger protein 19 [Source:ZFIN;Acc:ZDB-GENE-081105-128]
Coordinates
chr8:12335582-12339760:-
Coord C1 exon
chr8:12339693-12339760
Coord A exon
chr8:12337246-12337395
Coord C2 exon
chr8:12335582-12335651
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTCTTTTTGTTTTAGGTT
3' ss Score
13.41
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
CTCTCCAATACCCCTCTGCCTGAGCGAGGCCAGTTAATTCTTGATGCTCTCAACAACTATAAAAGCAA
Seq A exon
GTTTCTCTGCGGCAAGGAGATCAAGAAGAGGAAATGCATTTTCCGACTAAGAACGAGGGTCCCTCCTAACCCTCCATCTAAGTTGTACCCAGAGAAGGCCCAAAAAAGTGATGCACATAGGGGACGCAAAAAAGCAGTCAGCAGAAGCAG
Seq C2 exon
TAACTCTGATCCTGCAGAGAAGCGGAGGAAGAAGAGGGCCAAGTGGCTGCTGGAAGATGCTATTCCTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078050-'12-10,'12-9,13-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.529 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCAATACCCCTCTGCCT
R:
GTTAGGAATAGCATCTTCCAGCA
Band lengths:
138-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]