RnoEX6016547 @ rn6
Exon Skipping
Gene
ENSRNOG00000018874 | Phf19
Description
PHD finger protein 19 [Source:RGD Symbol;Acc:1310390]
Coordinates
chr3:13962401-13964730:-
Coord C1 exon
chr3:13964663-13964730
Coord A exon
chr3:13963006-13963167
Coord C2 exon
chr3:13962401-13962488
Length
162 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTCCTGTCACCCCAGGTT
3' ss Score
8.77
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
Exon sequences
Seq C1 exon
CTCACGAGCACCCCTGTGACAGAGCGAGGGCCGCATCTCCTCAACGCTCTCAACAGTTACAAAAGCCG
Seq A exon
GTTCCTGTGTGGCAAGGAGATTAAGAAGAAGAAATGCATCTTCCGACTGCGCGTCCGTGTCCCGCCCGCCCCTCCAGGAAAACTGCTTCCGGACAGGGCACAGATGCCAAGTGACAAAGGGACCTTTGAGCTGCTTCGTAAGAGAGGAAAGAGCAAGCCTGG
Seq C2 exon
TTTGTTGCCTCAGGAATCCCAGCAGCAGAAAAGGCGAGTTTATAGAAGAAAAAGATCAAAGTTTTTGCTGGAAGATGCTATTCCCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018874-'12-14,'12-12,14-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.291 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACGAGCACCCCTGTGA
R:
CTGGGAATAGCATCTTCCAGCA
Band lengths:
155-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]