BtaEX6036279 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012210 | C5
Description
complement C5a anaphylatoxin precursor [Source:RefSeq peptide;Acc:NP_001160088]
Coordinates
chr8:112257364-112260232:-
Coord C1 exon
chr8:112260027-112260232
Coord A exon
chr8:112258240-112258392
Coord C2 exon
chr8:112257364-112257429
Length
153 bp
Sequences
Splice sites
3' ss Seq
ACCTTGCTGTTTGTTGATAGGAT
3' ss Score
8.12
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GTAATCCACCTATTTATCGTTTCTGGAAAGATGATCTTCAGCAGAGAGACAGCTTTGTGCCCAACACTGGCACAGCTCGTATGGTAGAAACCACGGCCTACGCCTTACTCACCAATCTGAACTTGAAAGACATGAATTACGTGAACCCAGTCATCAAATGGCTATCGGAAGAGCAGAGATACGGAGGCGGCTTTTATTCAACCCAG
Seq A exon
GATACAATTAATGCCATCGAGGGCCTGACAGAGTATTCACTCCTGGTTAGAAAACTCCGCTTGAACATGGATGTCAAAGTGTCTTACAAGAATAAAGGTGACCTCTACCACTATAAGATGTCAGACAAGTATTTCCTTGGGAGGCCAATAGAG
Seq C2 exon
GTACCTCTCAATGATGACCTCGTCGTCCTAAGTACCGGACAAAGCAGTGGCTTGGCTACAGTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012210-'43-43,'43-42,44-43=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(27.0=100)
A:
PF076789=A2M_comp=PD(5.2=25.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATCTTCAGCAGAGAGACAGC
R:
ATGCACTGTAGCCAAGCCAC
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]