DreEX0017799 @ danRer10
Exon Skipping
Gene
ENSDARG00000021004 | c5
Description
complement component 5 [Source:ZFIN;Acc:ZDB-GENE-120510-2]
Coordinates
chr5:62769539-62773493:-
Coord C1 exon
chr5:62773288-62773493
Coord A exon
chr5:62770905-62771060
Coord C2 exon
chr5:62769539-62769632
Length
156 bp
Sequences
Splice sites
3' ss Seq
ATTCTCTCTCGGATTATCAGGAC
3' ss Score
6.47
5' ss Seq
GAGGTACGA
5' ss Score
8.65
Exon sequences
Seq C1 exon
GAAACCCACCAAGAGTCTGTTTCTGGCAAGAATCTGATACCAACATTGATCCATTAAAACCCAGCAGTGTGACAGCAAAGTCTGTGGAAACAACAGTTTACGTCCTGCTTAACACTTTAACCAGAGGTGAAACCGAATATGCAAAACCCATCTTGAACTGGTTGACACAAGATCAGAGATATGGAGGAGGCGTCTATTCAACACAG
Seq A exon
GACACCATTCTCACTTTGGAAGCCCTCACCATGTACAGCATTAAAGCCAGAGAAGCCAATTTAAACATGGTGGTTGACATTGAATACAAAACTAGGGGTGAAAGAATCAGCCGAATCCAACTAACTCAGCAGAAGCCTGTGGCTAAACCAATAGAG
Seq C2 exon
CTGAAAACTGTGTATTATGTGATGACGGAAAGCAATAAAAGTTGCCTTTTTGACACAACCATTGACATTCATGACAGTGACCAAAACTCAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021004_MULTIEX1-9/19=8-11
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.038 C2=0.062
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(26.2=100)
A:
PF076789=A2M_comp=PD(5.0=25.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACCCAGCAGTGTGACAGC
R:
CGTCTGAGTTTTGGTCACTGTCA
Band lengths:
245-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]