RnoEX0015730 @ rn6
Exon Skipping
Gene
ENSRNOG00000018899 | C5
Description
complement C5 [Source:RGD Symbol;Acc:2237]
Coordinates
chr3:14066912-14072998:-
Coord C1 exon
chr3:14072793-14072998
Coord A exon
chr3:14070247-14070399
Coord C2 exon
chr3:14066912-14066974
Length
153 bp
Sequences
Splice sites
3' ss Seq
GCCTTGTGGATTATCGCTAGGAT
3' ss Score
5.76
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GAGACCCGCCCATTTACCGTTTCTGGAGAGACACTCTCCAACGTCCAGACAGCTCAGCACCCAACAGCGGCACAGCAGGTATGGTAGAAACCACGGCCTATGCTTTGCTCACCAGCCTGAACCTGAAGGAGACGAGTTATGTCAACCCGATCATCAAGTGGCTATCTGAGGAGCAGAGGTATGGAGGCGGCTTTTATTCCACCCAG
Seq A exon
GATACCATTAACGCCATCGAGGGCCTGACAGAGTATTCACTCCTGGTTAAACAACTTCATTTGGATATGGATATCAATGTCTCCTACAAACACAAAGGGGATTTCTACCAGTATAAAGTGACAGAGAAGAACTTCCTCGGGAGGCCAGTGGAG
Seq C2 exon
GTACCCCTCAATGATGACCTCATCGTCACCACAGGCTATAGCAGTGGCTTGGCTACAGTATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018899-'41-48,'41-47,42-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(27.0=100)
A:
PF076789=A2M_comp=PD(5.2=25.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCCATTTACCGTTTCTGGA
R:
TGCTATAGCCTGTGGTGACGA
Band lengths:
243-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]