GgaEX0001802 @ galGal4
Exon Skipping
Gene
ENSGALG00000001565 | C5
Description
complement component 5 [Source:HGNC Symbol;Acc:HGNC:1331]
Coordinates
chr17:8323844-8325518:-
Coord C1 exon
chr17:8325313-8325518
Coord A exon
chr17:8324266-8324418
Coord C2 exon
chr17:8323844-8323906
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTTAAATTATTTGCTGACAGGAT
3' ss Score
6.08
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTGACCCTCCTATCTATCGTTTTTGGAAGGATGATTTTAAAACATCAGACCTACTTGCTCCCAGCCCTGTTACTGCACAAATGGTTGAGACTACAGCATATGCATTGCTTACTGCTTTGTTAAGAGGAGATAAGAACTATGCTAATCCAATCATCAAGTGGTTGTCTGAAGAACAAAGATACGGTGGAGGATTTTACTCAACTCAG
Seq A exon
GATACTGTTAATGCTCTTGAGGCCTTGACTGAATATTCCCTTCTTGTCAAACGGCTTCATCTGGACATGGGCATTAAGGTTGCATACAGAAATCATGGAGATCTTCATCTATTTAAACTCACAGAAGATAATTTTGTGGGAAGATCTGTGACA
Seq C2 exon
GTACCTTTGGATGATGACATATATGTAAGCACTGGCAGCAGCACTGGTATAGCTACAGTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001565-'33-42,'33-41,34-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(27.0=100)
A:
PF076789=A2M_comp=PD(5.2=25.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCCTCCTATCTATCGTTTTTGG
R:
GCTGCTGCCAGTGCTTACATA
Band lengths:
247-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]