GgaEX0001803 @ galGal4
Exon Skipping
Gene
ENSGALG00000001565 | C5
Description
complement component 5 [Source:HGNC Symbol;Acc:HGNC:1331]
Coordinates
chr17:8323301-8324418:-
Coord C1 exon
chr17:8324266-8324418
Coord A exon
chr17:8323844-8323906
Coord C2 exon
chr17:8323301-8323382
Length
63 bp
Sequences
Splice sites
3' ss Seq
ATTTAACACCAATCCCTTAGGTA
3' ss Score
4.69
5' ss Seq
AATGTAAGC
5' ss Score
6.12
Exon sequences
Seq C1 exon
GATACTGTTAATGCTCTTGAGGCCTTGACTGAATATTCCCTTCTTGTCAAACGGCTTCATCTGGACATGGGCATTAAGGTTGCATACAGAAATCATGGAGATCTTCATCTATTTAAACTCACAGAAGATAATTTTGTGGGAAGATCTGTGACA
Seq A exon
GTACCTTTGGATGATGACATATATGTAAGCACTGGCAGCAGCACTGGTATAGCTACAGTAAAT
Seq C2 exon
GTGAGGACAGTATACAATGTAATGGGTACTTCTGAAGAGTCGTGTAACTTTGAATTGAAGATTGTTCCAAAGAGAGATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001565-'34-43,'34-42,36-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PD(5.2=25.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCATCTGGACATGGGCAT
R:
ACACGACTCTTCAGAAGTACCCA
Band lengths:
145-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]