MmuEX6100787 @ mm9
Exon Skipping
Gene
ENSMUSG00000026874 | Hc
Description
hemolytic complement [Source:MGI Symbol;Acc:MGI:96031]
Coordinates
chr2:34851536-34856446:-
Coord C1 exon
chr2:34856294-34856446
Coord A exon
chr2:34852919-34852981
Coord C2 exon
chr2:34851536-34851617
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGTCCATCCCTCCAGGTA
3' ss Score
12.72
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GATACGATTAATGCCATCGAGGGCCTGACAGAATATTCACTCCTGTTAAAACAAATTCATTTGGATATGGACATCAATGTCGCCTACAAACACGAAGGTGACTTCCACAAGTATAAGGTGACAGAGAAGCATTTCCTGGGGAGGCCAGTGGAG
Seq A exon
GTATCTCTCAATGATGACCTTGTTGTCAGCACAGGCTACAGCAGTGGCTTGGCCACAGTATAT
Seq C2 exon
GTAAAAACTGTGGTTCACAAAATTAGTGTCTCTGAGGAATTTTGCAGCTTTTACTTGAAAATTGATACCCAAGATATTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026874-'33-36,'33-35,34-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PD(5.2=25.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAATGTCGCCTACAAACACG
R:
AAGCTGCAAAATTCCTCAGAGACA
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: