HsaEX6062820 @ hg19
Exon Skipping
Gene
ENSG00000106804 | C5
Description
complement component 5 [Source:HGNC Symbol;Acc:1331]
Coordinates
chr9:123732448-123737209:-
Coord C1 exon
chr9:123737057-123737209
Coord A exon
chr9:123734208-123734270
Coord C2 exon
chr9:123732448-123732529
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTATTATCTTTCCAGGTG
3' ss Score
11.9
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GACACAATCAATGCCATTGAGGGCCTGACGGAATATTCACTCCTGGTTAAACAACTCCGCTTGAGTATGGACATCGATGTTTCTTACAAGCATAAAGGTGCCTTACATAATTATAAAATGACAGACAAGAATTTCCTTGGGAGGCCAGTAGAG
Seq A exon
GTGCTTCTCAATGATGACCTCATTGTCAGTACAGGATTTGGCAGTGGCTTGGCTACAGTACAT
Seq C2 exon
GTAACAACTGTAGTTCACAAAACCAGTACCTCTGAGGAAGTTTGCAGCTTTTATTTGAAAATCGATACTCAGGATATTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106804-'39-43,'39-42,40-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PD(5.2=25.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTTGAGTATGGACATCGA
R:
GCTGCAAACTTCCTCAGAGGT
Band lengths:
145-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)