GgaEX0001803 @ galGal3
Exon Skipping
Gene
ENSGALG00000001565 | C5
Description
NA
Coordinates
chr17:9027040-9029257:-
Coord C1 exon
chr17:9029052-9029257
Coord A exon
chr17:9027583-9027645
Coord C2 exon
chr17:9027040-9027121
Length
63 bp
Sequences
Splice sites
3' ss Seq
ATTTAACACCAATCCCTTAGGTA
3' ss Score
4.69
5' ss Seq
AATGTAAGC
5' ss Score
6.12
Exon sequences
Seq C1 exon
GTGACCCTCCTATCTATCGTTTTTGGAAGGATGATTTTAAAACATCAGACCTACTTGCTCCCAGCCCTGTTACTGCACAAATGGTTGAGACTACAGCATATGCATTGCTTACTGCTTTGTTAAGAGGAGATAAGAACTATGCTAATCCAATCATCAAGTGGTTGTCTGAAGAACAAAGATACGGTGGAGGATTTTACTCAACTCAG
Seq A exon
GTACCTTTGGATGATGACATATATGTAAGCACTGGCAGCAGCACTGGTATAGCTACAGTAAAT
Seq C2 exon
GTGAGGACAGTATACAATGTAATGGGTACTTCTGAAGAGTCGTGTAACTTTGAATTGAAGATTGTTCCAAAGAGAGATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001565_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(27.0=100)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTACTGCTTTGTTAAGAGGAGA
R:
ACACGACTCTTCAGAAGTACCCA
Band lengths:
146-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]