BtaEX6036280 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012210 | C5
Description
complement C5a anaphylatoxin precursor [Source:RefSeq peptide;Acc:NP_001160088]
Coordinates
chr8:112256206-112258392:-
Coord C1 exon
chr8:112258240-112258392
Coord A exon
chr8:112257364-112257429
Coord C2 exon
chr8:112256206-112256287
Length
66 bp
Sequences
Splice sites
3' ss Seq
GAATGCAAAAATCTTTCCAGGTA
3' ss Score
4.4
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GATACAATTAATGCCATCGAGGGCCTGACAGAGTATTCACTCCTGGTTAGAAAACTCCGCTTGAACATGGATGTCAAAGTGTCTTACAAGAATAAAGGTGACCTCTACCACTATAAGATGTCAGACAAGTATTTCCTTGGGAGGCCAATAGAG
Seq A exon
GTACCTCTCAATGATGACCTCGTCGTCCTAAGTACCGGACAAAGCAGTGGCTTGGCTACAGTGCAT
Seq C2 exon
GTAAAAACTGTGGTTCACAAAATCAGCACCTCGGAGGAAGTTTGCAGCTTCCATTTGAAAATTGAAACCCGGGAAATTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012210-'44-44,'44-43,45-44=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PD(5.2=25.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGAGGGCCTGACAGAGTA
R:
ACTTCCTCCGAGGTGCTGATT
Band lengths:
180-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]