BtaEX6036309 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112462429-112465733:+
Coord C1 exon
chr8:112462429-112462608
Coord A exon
chr8:112464704-112464883
Coord C2 exon
chr8:112465617-112465733
Length
180 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTTTTTTTATCTCAGAAG
3' ss Score
7.69
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATTAATTTTGACAAGAGGCAACATGAAGCAAGAATTCAGCAGTTAGAGAATGAGATTCACTATTTACAAGAAAATCTGAAAAGTATGGAGGAAATCCAAGGGCTTACAGATCTGCAACTGCAGGAAGCTGATGAAGAGAAGGAGAGAATTCTAGCCCAACTCCAGGAGTTAGAGAAGAAG
Seq A exon
AAGAAACTTGAAGATGCTAAATCTCAGGCGCAGGTTCTGGGTTTAGATAAAGAATTGAAGAAACTAAAGAAGGCTGTGGCCGCCTCTGATAAGATAGCCACGGCTGAGCTCACCATCGCCAAAGACCAGCTCAAGTCCCTTCATGGAACTGTTATGAAAATTAACCAGGAGCGTGCAGAG
Seq C2 exon
GACCTGCAGGAAGCAGAGCGGTTCAGCAGAAAGGCAGCACAGGCCGCAAGGGATCTGACCCGAGCGGAAGCGGAGATCGAACTCCTGCAGAACCTCCTCAGGGAGAGAGAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417-'23-31,'23-27,24-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=0.117 C2=0.231
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAAGAGGCAACATGAAGCA
R:
GAGTTCGATCTCCGCTTCCG
Band lengths:
256-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]