RnoEX0022616 @ rn6
Exon Skipping
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14337585-14341029:+
Coord C1 exon
chr3:14337585-14337764
Coord A exon
chr3:14339753-14339932
Coord C2 exon
chr3:14340913-14341029
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTATGGTTCTTTTATTTTAGAAG
3' ss Score
7.71
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
ATTAAGTTTGATAAAAGACAACATAATGCAAGAATCCAGCAATTAGAAAACGAAATTCACTATTTGCAAGAGAACCTAAAAAGTATGGAAAAAATCCAAGGCCTTACAGACCTCCAGCTTCAGGAAGCAGATGAAGAGAAGGAAAGAATTCTGGCCCAACTCCAGGAGTTAGAGAAAAAG
Seq A exon
AAGAGGCGGGAAGATGCCAGGTCTCAGGAGCAGTTCCTTGGTTTAGATACAGAGCTGAAAAGTCTGAAGAAGGCTGTGGCTGCTTCTGATAAACTAGCTGCAGCCGAGCTCACCATTGCCAAAGAGCAGCTCAAGTCCCTGCACGGAACTGTCATGAGGATTAATCAGGAGCGAGCAGAG
Seq C2 exon
GAGCTGCAGGAGGCAGAGCGGTCCAGCAGAGAGGCCATGCAAGCAGCCAAGGACCTGAGCAGAGCCGAGGCAGAGATCGAGCTCCTACAGCACCTTCTCAGGGAGAGAGAGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=0.272 C2=0.462
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACATAATGCAAGAATCCAGCA
R:
TGTAGGAGCTCGATCTCTGCC
Band lengths:
252-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]