GgaEX1016170 @ galGal4
Exon Skipping
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8360889-8362228:+
Coord C1 exon
chr17:8360889-8361068
Coord A exon
chr17:8361347-8361526
Coord C2 exon
chr17:8362112-8362228
Length
180 bp
Sequences
Splice sites
3' ss Seq
TGTTGCTTTCCTGGTTTCAGAAA
3' ss Score
9.2
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GTTAAATCTGAAAACAGGCAGAATAAGAACAAGGTCCATCAGTTAGAGAACAAAATTCAACTCTTACGTGAAAAAATAAAGAGTATGGAAGAAATTCAGGGCCTGGCTGATCAACAGCTCCAAGAGGCAGATGAAGAAAAAGAGGCTATTCTTGCTCAACTAGAAGACTTGGAGAAAAGG
Seq A exon
AAAAAAATAGAAGATGCCAGGGCACAAATGCAATTTGCTGATCTAGATAAAGAACTGAAGGAATTAAAGAGAGCAATCATCACTTCAGATAAATTGGCGGCCGCTGAGCTATCCATTGCTAAAAATCAGCTGCAGGCTCTTCATGGGACTGTTCTCAAAATTAATCAGGAACGAGCTGAG
Seq C2 exon
GAATTTGAGGAAGCTGAAGAGTTCTGTGTTGAGGCAGCTCGTGCAACTCGGGATCTTGCTCGAGCAGAAGCAGAAATAGAATTGTTACAACAACTTCTAAAACAGAAGGAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=0.017 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGCAGAATAAGAACAAGGTCC
R:
TCTATTTCTGCTTCTGCTCGAGC
Band lengths:
247-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]