DreEX6014119 @ danRer10
Exon Skipping
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62737293-62740742:-
Coord C1 exon
chr5:62740587-62740742
Coord A exon
chr5:62737496-62737675
Coord C2 exon
chr5:62737293-62737400
Length
180 bp
Sequences
Splice sites
3' ss Seq
TATGACTGTTGTTTTTCTAGATG
3' ss Score
10.2
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
ACAACAGAGAGACGTGGTGAAGAAGCGGAGCTCCATAGATTGAGGGAAGAGCTGGAAGAAGCTCGTGAGCAGCACTACTTGATGGCGCAGCGTTTAGAGGAGACAGAGATCGACAGGGACCGTATACTTGGAGAGTTAGAGGAACAAGATAAACAG
Seq A exon
ATGAACGCTGAGAAAACCCAGACTCAAGAGCAGCTGGAGTCTCTCAATCTAGAGATGCAGGCTCTCCGGAGATCTTTTTCCTCTGCTGACAGACAGGCTGCCCAACAGCTGATCACAGCGAAGGACAAGCTTCACTCTCTTCATAGCACTGTAGAGAAAATCAATCTGGAAAGAGCAGCG
Seq C2 exon
AATGCAGAGGAGTTACAGAGCACCAGGATTCAGGCTGCCCAAGCCATTCAAGACTTGACTAACGCTGAAGCAGAAATCCAGGTCCTCCAGAAGCTTCTGAGTGATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492-'22-27,'22-26,23-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.904 A=0.727 C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGACGTGGTGAAGAAGCG
R:
GAAGCTTCTGGAGGACCTGGA
Band lengths:
247-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]