BtaEX6036628 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015144 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:HGNC:24852]
Coordinates
chr7:3616193-3617071:+
Coord C1 exon
chr7:3616193-3616300
Coord A exon
chr7:3616736-3616816
Coord C2 exon
chr7:3616901-3617071
Length
81 bp
Sequences
Splice sites
3' ss Seq
TCATTCCCCATCCTTCCCAGCCC
3' ss Score
6.65
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
AGCCAAATGTCATTGCAATATATCTACCTCCTGTTTCTGGAGCACGACCTCAGCCTAGGAAACCTGGCCATGGAGACACTGGCCCAGCAGAAAAGAGACTACTACCAG
Seq A exon
CCCTTGGCTGCCAAACGGACTGAGATTGAGAAGTGGCGGAAGGAGTTCAAGGAGCAGTGGATGAAAGAGCAGAAGCGGATG
Seq C2 exon
AACGAGGCGGTGCAGGCGCTGCGGCGGGCCCAGCTCCAGTACACGCAGCGCAGCGAGGAGCTGCGGGTGCGTTCCCAGGTATCGCCGGAAGACCTGGCTCTCCAGGCCTCACCAGGCCCCAACAAACAGCAGGAGCGGCGGCGGCGCTCTCGAGAAGAGGCCCAGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015144-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.491
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCTGGAGCACGACCTCAG
R:
AGGTCTTCCGGCGATACCTG
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]