DreEX6098619 @ danRer10
Exon Skipping
Gene
ENSDARG00000062049 | hmha1b
Description
histocompatibility (minor) HA-1 b [Source:ZFIN;Acc:ZDB-GENE-071213-2]
Coordinates
chr22:17601480-17603336:-
Coord C1 exon
chr22:17603226-17603336
Coord A exon
chr22:17601742-17601822
Coord C2 exon
chr22:17601480-17601647
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTTTTATGTTTGTCCCTAGCCT
3' ss Score
10
5' ss Seq
CTGGTAACA
5' ss Score
4.6
Exon sequences
Seq C1 exon
CCACACATGCCCTTCTTCACCATCTACTCTCAGGCACTGGAGCAGGATCTGGAGCAGAGCAATGGCATGCATCAGGCTGCCGCAACTCTACAGAACCAGACCTTTATCATG
Seq A exon
CCTCTGATGGTCCGCAAACAAGAGCATGAGAAGAAACGCAAAGAGATCAAGGAGCAGTGGCTGAAGGCCAAAAGAAAACTG
Seq C2 exon
ATGGAGTGTGACGTGAACCTACGCAGGGCTAAACAGGTCTACATGACCCGCTGTGAAGAATATGATAAAGCCAGGACAGCGGCGAACAGGGCCGAGGAGGAGGGCGGCAGTGCCACCACCAAAACACTGGACAAGAAGAAACGACTGGAGGAAGAGGCCAGAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062049-'8-11,'8-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=0.185 C2=0.589
Domain overlap (PFAM):
C1:
PF0061118=FCH=PD(35.2=86.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCGCAACTCTACAGAACC
R:
TGTCCAGTGTTTTGGTGGTGG
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]