MmuEX6049727 @ mm9
Exon Skipping
Gene
ENSMUSG00000035697 | Hmha1
Description
histocompatibility (minor) HA-1 [Source:MGI Symbol;Acc:MGI:1917969]
Coordinates
chr10:79484822-79487596:+
Coord C1 exon
chr10:79484822-79484932
Coord A exon
chr10:79485020-79485100
Coord C2 exon
chr10:79487408-79487596
Length
81 bp
Sequences
Splice sites
3' ss Seq
TCTGTCCCTGCCTCCCTTAGCCC
3' ss Score
8.36
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
CCCCACATGCCTCTCTTGTCCATCTACTCACTGGCCCTGGAACAAGATTTGGAGTTTGGCCACGGCATGGTGCAGGCAGCGGGCACACTGCAGACCCAGACCTTCATGCAG
Seq A exon
CCCCTGACGCTGCGGCGGTTGGAGCATGAGAGGCGCAGGAAGGAGATCAAAGAATCTTGGCATCGAGCACAGAGGAAGCTG
Seq C2 exon
CAAGAGGCAGAGGCCAACCTGCGCAAGGCCAAACAGGGCTACAAACAACGCTGTGAAGACCACGACAAGGCCCGGCTCCAGGTGGCCAAGGCTGAGGAGGAACAACAGGGCACAGGCCCAGGCGCAGGGACTGCGGCCTCTAAGGCCCTGGACAAGAGGCGCAGACTGGAGGAAGAGGCCAAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035697-'13-11,'13-10,14-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=1.000 C2=0.968
Domain overlap (PFAM):
C1:
PF0061118=FCH=PD(34.4=83.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAGACCCAGACCTTCAT
R:
TCTTGTCCAGGGCCTTAGAGG
Band lengths:
182-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: