GgaEX6027996 @ galGal4
Exon Skipping
Gene
ENSGALG00000002559 | HMHA1
Description
minor histocompatibility protein HA-1 [Source:RefSeq peptide;Acc:NP_001026108]
Coordinates
chr28:2845869-2846825:+
Coord C1 exon
chr28:2845869-2845979
Coord A exon
chr28:2846063-2846143
Coord C2 exon
chr28:2846646-2846825
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGCACCATTTGCTTCCGCAGCCG
3' ss Score
8.29
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
ACCAGCATGCCCTTCCTGTCCATCTACCTGCTGGCATTGGAGCAGGACATGGAGTACGGCACGTCGGTCCTGCAGACCGTCACCACGCTGCAGCACCAGACCTTCCTGCAG
Seq A exon
CCGCTGACTGTGAGGCGCCTGGAGCACGAGAAGAGAAGGAAGGAGATCAAGGAGCAGTGGCACCGCGCACAGAGGAAGCTG
Seq C2 exon
CAAGACGCGGAGGTGAACCTGCGGAAGGCCAAGCAGGTGTACATGCAGCGCAGCGAGGAGCACGATAAGGCCAAATATGTGACAGTGAAAGCAGAGGAGGAGCAGCAGAGCACCGCCAGCAGCATCACCACCAAAACCCTGGACAAGAAGAGGCGGCTGGAGGAGGAGGCCAAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002559-'11-11,'11-9,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.519 C2=0.600
Domain overlap (PFAM):
C1:
PF0061118=FCH=PD(35.2=86.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTGGAGCAGGACATGGAG
R:
TGCTCCTCCTCTGCTTTCACT
Band lengths:
182-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]