RnoEX6030587 @ rn6
Exon Skipping
Gene
ENSRNOG00000013220 | Arhgap45
Description
Rho GTPase activating protein 45 [Source:RGD Symbol;Acc:1308662]
Coordinates
chr7:12733626-12736224:-
Coord C1 exon
chr7:12736114-12736224
Coord A exon
chr7:12735946-12736026
Coord C2 exon
chr7:12733626-12733814
Length
81 bp
Sequences
Splice sites
3' ss Seq
TCTGCTCCTGCCTCCCTTAGCCC
3' ss Score
8.03
5' ss Seq
CTGGTAGGG
5' ss Score
6.35
Exon sequences
Seq C1 exon
CCCCACATGCCTCTCTTATCCATCTACTCACTGGCCCTGGAACAAGATCTGGAGTTTGGCCACGGCATGGTGCAGGCAGTGGGCACGCTGCAGACCCAGACCTTCATGCAG
Seq A exon
CCCCTGACCCTGCGGCGGTTGGAGCATGAGAGACGCAGGAAGGAGATCAAAGAATCCTGGCATCGTGCACAGAGGAAGCTG
Seq C2 exon
CAAGAGGCAGAGGCCAACCTGCGCAAGGCTAAACAGGGCTACAAACAACGTTGTGAAGACCACGACAAGGCCCGGCTCCAGGTGGCCAAGGCTGAGGAGGAACAACAGGGCACAGGGCCAGGAGCAGGGACTGCAGCCTCCAAGGCCCTGGACAAGAGGCGGAGGCTGGAGGAAGAGGCCAAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013220-'17-11,'17-10,18-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.963 C2=0.968
Domain overlap (PFAM):
C1:
PF0061118=FCH=PD(35.9=89.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATCTGGAGTTTGGCCACG
R:
GTTGTTCCTCCTCAGCCTTGG
Band lengths:
174-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]